IL_9I3L_095

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

9I3L|1|b|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I3L_095 not in the Motif Atlas

Geometric match to IL_3MXH_003

Geometric discrepancy: 0.3688

The information below is about IL_3MXH_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

9I3L|1|b|U|2405
9I3L|1|b|U|2406
9I3L|1|b|C|2407
*
9I3L|1|b|G|2418
9I3L|1|b|G|2419

Current chains

Chain b

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL33

Chain 7

Large ribosomal subunit protein bL35

Chain l

Large ribosomal subunit protein uL15