IL_9I5T_001
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGGAUG*CUGAACC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5T_001 not in the Motif Atlas
- Geometric match to IL_8B0X_065
- Geometric discrepancy: 0.0732
- The information below is about IL_8B0X_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9I5T|1|A|G|13
9I5T|1|A|U|14
9I5T|1|A|G|15
9I5T|1|A|G|16
9I5T|1|A|A|17
9I5T|1|A|U|18
9I5T|1|A|G|19
*
9I5T|1|A|C|533
9I5T|1|A|U|534
9I5T|1|A|G|535
9I5T|1|A|A|536
9I5T|1|A|A|537
9I5T|1|A|C|538
9I5T|1|A|C|539
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain T
- Large ribosomal subunit protein bL20
- Chain V
- Large ribosomal subunit protein uL22
Coloring options: