IL_9I5T_019

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_019 not in the Motif Atlas

Geometric match to IL_8B0X_083

Geometric discrepancy: 0.0695

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9I5T|1|A|U|738
9I5T|1|A|G|739
9I5T|1|A|A|740
9I5T|1|A|A|741
9I5T|1|A|G|742
*
9I5T|1|A|U|759
9I5T|1|A|G|760
9I5T|1|A|G|761
9I5T|1|A|A|762
9I5T|1|A|G|763

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2