IL_9I5T_021

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

9I5T|1|A|G|811, 9I5T|1|A|A|823, 9I5T|1|A|A|824, 9I5T|1|A|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_021 not in the Motif Atlas

Geometric match to IL_8P9A_261

Geometric discrepancy: 0.0877

The information below is about IL_8P9A_261

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9I5T|1|A|G|810
9I5T|1|A|G|811
9I5T|1|A|G|812
*
9I5T|1|A|U|822
9I5T|1|A|A|823
9I5T|1|A|A|824
9I5T|1|A|U|825
9I5T|1|A|C|826

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain D

Large ribosomal subunit protein uL2

Chain V

Large ribosomal subunit protein uL22