IL_9I5T_023

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_023 not in the Motif Atlas

Geometric match to IL_7A0S_024

Geometric discrepancy: 0.3753

The information below is about IL_7A0S_024

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_79144.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9I5T|1|A|G|879
9I5T|1|A|A|880
9I5T|1|A|U|881
*
9I5T|1|A|A|966
9I5T|1|A|C|967

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30