IL_9I5T_027

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCGACU*AAAC

Length

10 nucleotides

Bulged bases

9I5T|1|A|G|900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_027 not in the Motif Atlas

Geometric match to IL_4WF9_033

Geometric discrepancy: 0.1369

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.2

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9I5T|1|A|G|898
9I5T|1|A|C|899
9I5T|1|A|G|900
9I5T|1|A|A|901
9I5T|1|A|C|902
9I5T|1|A|U|903
*
9I5T|1|A|A|943
9I5T|1|A|A|944
9I5T|1|A|A|945
9I5T|1|A|C|946

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

Large ribosomal subunit protein uL16