IL_9I5T_029

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

9I5T|1|A|C|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_029 not in the Motif Atlas

Geometric match to IL_8B0X_096

Geometric discrepancy: 0.0822

The information below is about IL_8B0X_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9I5T|1|A|C|1027
9I5T|1|A|C|1028
9I5T|1|A|G|1029
*
9I5T|1|A|C|1194
9I5T|1|A|G|1195

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30

Chain M

Large ribosomal subunit protein uL13

Chain T

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein bL21