IL_9I5T_032

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

9I5T|1|A|U|1045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_032 not in the Motif Atlas

Geometric match to IL_8B0X_099

Geometric discrepancy: 0.1002

The information below is about IL_8B0X_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9I5T|1|A|A|1044
9I5T|1|A|U|1045
9I5T|1|A|A|1046
*
9I5T|1|A|U|1184
9I5T|1|A|U|1185

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL13

Chain T

Large ribosomal subunit protein bL20