IL_9I5T_038
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5T_038 not in the Motif Atlas
- Geometric match to IL_4WF9_048
- Geometric discrepancy: 0.0917
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9I5T|1|A|A|1291
9I5T|1|A|U|1292
9I5T|1|A|A|1293
9I5T|1|A|A|1294
9I5T|1|A|G|1295
9I5T|1|A|U|1296
9I5T|1|A|A|1297
9I5T|1|A|A|1298
*
9I5T|1|A|U|2021
9I5T|1|A|G|2022
9I5T|1|A|A|2023
9I5T|1|A|A|2024
9I5T|1|A|A|2025
9I5T|1|A|U|2026
9I5T|1|A|U|2027
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain F
- Large ribosomal subunit protein uL4
- Chain Q
- Large ribosomal subunit protein bL17
- Chain V
- Large ribosomal subunit protein uL22
Coloring options: