IL_9I5T_040

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

9I5T|1|A|G|1361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_040 not in the Motif Atlas

Geometric match to IL_8B0X_110

Geometric discrepancy: 0.1049

The information below is about IL_8B0X_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

9I5T|1|A|U|1348
9I5T|1|A|C|1349
9I5T|1|A|A|1350
9I5T|1|A|A|1351
9I5T|1|A|C|1352
*
9I5T|1|A|G|1360
9I5T|1|A|G|1361
9I5T|1|A|A|1362

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL22