IL_9I5T_041

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_041 not in the Motif Atlas

Geometric match to IL_8B0X_111

Geometric discrepancy: 0.0612

The information below is about IL_8B0X_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9I5T|1|A|C|1380
9I5T|1|A|U|1381
9I5T|1|A|A|1382
9I5T|1|A|A|1383
9I5T|1|A|G|1384
*
9I5T|1|A|C|1405
9I5T|1|A|G|1406
9I5T|1|A|A|1407
9I5T|1|A|U|1408
9I5T|1|A|G|1409

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain D

Large ribosomal subunit protein uL2