IL_9I5T_044

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

9I5T|1|A|U|1450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_044 not in the Motif Atlas

Geometric match to IL_7A0S_051

Geometric discrepancy: 0.2924

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

9I5T|1|A|C|1447
9I5T|1|A|G|1448
9I5T|1|A|A|1449
9I5T|1|A|U|1450
9I5T|1|A|G|1451
*
9I5T|1|A|C|1614
9I5T|1|A|U|1615
9I5T|1|A|A|1616
9I5T|1|A|A|1617
9I5T|1|A|G|1618

Current chains

Chain A

23S rRNA

Nearby chains