IL_9I5T_050

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

9I5T|1|A|G|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_050 not in the Motif Atlas

Geometric match to IL_8B0X_126

Geometric discrepancy: 0.0571

The information below is about IL_8B0X_126

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9I5T|1|A|A|1705
9I5T|1|A|C|1706
9I5T|1|A|U|1707
9I5T|1|A|A|1708
9I5T|1|A|G|1709
9I5T|1|A|G|1710
*
9I5T|1|A|C|2000
9I5T|1|A|U|2001
9I5T|1|A|G|2002
9I5T|1|A|U|2003

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein uL14