IL_9I5T_058

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGGAG*UGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_058 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.1395

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9I5T|1|A|A|1865
9I5T|1|A|G|1866
9I5T|1|A|G|1867
9I5T|1|A|A|1868
9I5T|1|A|G|1869
*
9I5T|1|A|U|1892
9I5T|1|A|G|1893
9I5T|1|A|A|1894
9I5T|1|A|A|1895
9I5T|1|A|U|1896

Current chains

Chain A

23S rRNA

Nearby chains