IL_9I5T_061

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

9I5T|1|A|A|1948, 9I5T|1|A|U|1954

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|C|1944
9I5T|1|A|G|1945
9I5T|1|A|A|1946
9I5T|1|A|A|1947
9I5T|1|A|A|1948
9I5T|1|A|5MU|1949
9I5T|1|A|U|1950
9I5T|1|A|C|1951
9I5T|1|A|C|1952
9I5T|1|A|U|1953
9I5T|1|A|U|1954
9I5T|1|A|G|1955
*
9I5T|1|A|C|1971
9I5T|1|A|5MC|1972
9I5T|1|A|U|1973
9I5T|1|A|G|1974

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2