IL_9I5T_076

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CG*(PSU)GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_076 not in the Motif Atlas

Geometric match to IL_4V9F_086

Geometric discrepancy: 0.0839

The information below is about IL_4V9F_086

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

19

Unit IDs

9I5T|1|A|C|2508
9I5T|1|A|G|2509
*
9I5T|1|A|PSU|2581
9I5T|1|A|G|2582
9I5T|1|A|G|2583

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3