IL_9I5T_077

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9I5T|1|A|G|2577, 9I5T|1|A|A|2578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_077 not in the Motif Atlas

Geometric match to IL_9DFE_097

Geometric discrepancy: 0.085

The information below is about IL_9DFE_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9I5T|1|A|C|2511
9I5T|1|A|U|2512
9I5T|1|A|C|2513
*
9I5T|1|A|G|2575
9I5T|1|A|C|2576
9I5T|1|A|G|2577
9I5T|1|A|A|2578
9I5T|1|A|G|2579

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain E

Large ribosomal subunit protein uL3