IL_9I5T_088

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*CGAG

Length

7 nucleotides

Bulged bases

9I5T|1|A|A|2858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_088 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2005

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9I5T|1|A|C|2829
9I5T|1|A|A|2830
9I5T|1|A|G|2831
*
9I5T|1|A|C|2856
9I5T|1|A|G|2857
9I5T|1|A|A|2858
9I5T|1|A|G|2859

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein bL17

Chain S

Large ribosomal subunit protein bL19