IL_9I5T_089

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAUG*UAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_089 not in the Motif Atlas

Geometric match to IL_4V9F_099

Geometric discrepancy: 0.3649

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9I5T|1|A|U|2833
9I5T|1|A|G|2834
9I5T|1|A|U|2835
9I5T|1|A|A|2836
9I5T|1|A|U|2837
9I5T|1|A|G|2838
*
9I5T|1|A|U|2851
9I5T|1|A|A|2852
9I5T|1|A|A|2853
9I5T|1|A|G|2854

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL17

Chain S

Large ribosomal subunit protein bL19