IL_9I5V_007
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAACUG*CUCAUUAC
- Length
- 15 nucleotides
- Bulged bases
- 9I5V|1|A|U|183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_007 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.203
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9I5V|1|A|G|166
9I5V|1|A|G|167
9I5V|1|A|A|168
9I5V|1|A|A|169
9I5V|1|A|C|170
9I5V|1|A|U|171
9I5V|1|A|G|172
*
9I5V|1|A|C|179
9I5V|1|A|U|180
9I5V|1|A|C|181
9I5V|1|A|A|182
9I5V|1|A|U|183
9I5V|1|A|U|184
9I5V|1|A|A|185
9I5V|1|A|C|186
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL28
- Chain 6
- Large ribosomal subunit protein bL34
- Chain 7
- Large ribosomal subunit protein bL35
- Chain O
- Large ribosomal subunit protein uL15
Coloring options: