IL_9I5V_008

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_008 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.071

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9I5V|1|A|U|217
9I5V|1|A|C|218
9I5V|1|A|A|219
9I5V|1|A|G|220
9I5V|1|A|U|221
9I5V|1|A|A|222
9I5V|1|A|G|223
*
9I5V|1|A|C|231
9I5V|1|A|G|232
9I5V|1|A|A|233
9I5V|1|A|A|234
9I5V|1|A|C|235
9I5V|1|A|G|236

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15