IL_9I5V_015

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAU*AGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_015 not in the Motif Atlas

Geometric match to IL_9DFE_014

Geometric discrepancy: 0.1052

The information below is about IL_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9I5V|1|A|U|628
9I5V|1|A|U|629
9I5V|1|A|A|630
9I5V|1|A|A|631
9I5V|1|A|U|632
*
9I5V|1|A|A|649
9I5V|1|A|G|650
9I5V|1|A|G|651
9I5V|1|A|A|652
9I5V|1|A|G|653

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4

Chain O

Large ribosomal subunit protein uL15