IL_9I5V_019

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

9I5V|1|A|G|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_019 not in the Motif Atlas

Geometric match to IL_9E6Q_028

Geometric discrepancy: 0.0498

The information below is about IL_9E6Q_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

9I5V|1|A|U|737
9I5V|1|A|U|738
*
9I5V|1|A|G|763
9I5V|1|A|G|764
9I5V|1|A|A|765

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2