IL_9I5V_027

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUU*AGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_027 not in the Motif Atlas

Geometric match to IL_8GLP_166

Geometric discrepancy: 0.3595

The information below is about IL_8GLP_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9I5V|1|A|G|904
9I5V|1|A|A|905
9I5V|1|A|U|906
9I5V|1|A|U|907
*
9I5V|1|A|A|939
9I5V|1|A|G|940
9I5V|1|A|A|941
9I5V|1|A|U|942

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein uL16