IL_9I5V_050

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

9I5V|1|A|C|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_050 not in the Motif Atlas

Geometric match to IL_8B0X_133

Geometric discrepancy: 0.1463

The information below is about IL_8B0X_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9I5V|1|A|C|1846
9I5V|1|A|C|1847
9I5V|1|A|G|1848
9I5V|1|A|G|1849
*
9I5V|1|A|C|1912
9I5V|1|A|G|1913

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA