IL_9I5V_052

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_052 not in the Motif Atlas

Geometric match to IL_8B0X_137

Geometric discrepancy: 0.0659

The information below is about IL_8B0X_137

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

9I5V|1|A|G|1943
9I5V|1|A|C|1944
*
9I5V|1|A|G|1974
9I5V|1|A|C|1975
9I5V|1|A|A|1976
9I5V|1|A|C|1977

Current chains

Chain A

23S rRNA

Nearby chains

Chain 10

AURKAIP1/COX24 domain-containing protein