IL_9I5V_067

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_067 not in the Motif Atlas

Geometric match to IL_4WF9_093

Geometric discrepancy: 0.1543

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9I5V|1|A|C|2467
9I5V|1|A|C|2468
9I5V|1|A|A|2469
9I5V|1|A|A|2470
9I5V|1|A|G|2471
*
9I5V|1|A|C|2481
9I5V|1|A|G|2482
9I5V|1|A|A|2483
9I5V|1|A|C|2484
9I5V|1|A|G|2485

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain P

Large ribosomal subunit protein uL16