IL_9I5V_085
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_085 not in the Motif Atlas
- Geometric match to IL_9AXU_128
- Geometric discrepancy: 0.1223
- The information below is about IL_9AXU_128
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.14
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 13
Unit IDs
9I5V|1|B|U|32
9I5V|1|B|U|33
9I5V|1|B|C|34
9I5V|1|B|C|35
9I5V|1|B|C|36
*
9I5V|1|B|G|42
9I5V|1|B|A|43
9I5V|1|B|A|44
9I5V|1|B|C|45
9I5V|1|B|A|46
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain 11
- Large ribosomal subunit protein uL5
- Chain 12
- Large ribosomal subunit protein bL31B
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- Large ribosomal subunit protein uL18
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