IL_9I5V_090

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACAU*AGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_090 not in the Motif Atlas

Geometric match to IL_9M86_006

Geometric discrepancy: 0.3511

The information below is about IL_9M86_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9I5V|1|a|A|53
9I5V|1|a|C|54
9I5V|1|a|A|55
9I5V|1|a|U|56
*
9I5V|1|a|A|361
9I5V|1|a|G|362
9I5V|1|a|U|363

Current chains

Chain a

16S rRNA

Nearby chains