IL_9I5V_091

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAG*CG

Length

6 nucleotides

Bulged bases

9I5V|1|a|G|64, 9I5V|1|a|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_091 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.1481

The information below is about IL_4V9F_021

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9I5V|1|a|C|63
9I5V|1|a|G|64
9I5V|1|a|A|65
9I5V|1|a|G|66
*
9I5V|1|a|C|105
9I5V|1|a|G|106

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein bS20