IL_9I5V_105
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGGGA*UGAAUG
- Length
- 11 nucleotides
- Bulged bases
- 9I5V|1|a|A|482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_105 not in the Motif Atlas
- Geometric match to IL_8B0X_021
- Geometric discrepancy: 0.3384
- The information below is about IL_8B0X_021
- Detailed Annotation
- tWW-tWH-tHS
- Broad Annotation
- tWW-tWH-tHS
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9I5V|1|a|C|450
9I5V|1|a|G|451
9I5V|1|a|G|452
9I5V|1|a|G|453
9I5V|1|a|A|454
*
9I5V|1|a|U|480
9I5V|1|a|G|481
9I5V|1|a|A|482
9I5V|1|a|A|483
9I5V|1|a|U|484
9I5V|1|a|G|485
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein bS16
- Chain l
- Small ribosomal subunit protein uS4
Coloring options: