IL_9I5V_106

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_106 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.1209

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9I5V|1|a|A|499
9I5V|1|a|G|500
9I5V|1|a|C|501
*
9I5V|1|a|G|541
9I5V|1|a|A|542
9I5V|1|a|U|543

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

Small ribosomal subunit protein uS12

Chain l

Small ribosomal subunit protein uS4