IL_9I5V_108

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAAAG*CA

Length

9 nucleotides

Bulged bases

9I5V|1|a|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_108 not in the Motif Atlas

Geometric match to IL_8B0X_025

Geometric discrepancy: 0.0634

The information below is about IL_8B0X_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

6

Unit IDs

9I5V|1|a|U|569
9I5V|1|a|U|570
9I5V|1|a|U|571
9I5V|1|a|A|572
9I5V|1|a|A|573
9I5V|1|a|A|574
9I5V|1|a|G|575
*
9I5V|1|a|C|879
9I5V|1|a|A|880

Current chains

Chain a

16S rRNA

Nearby chains

Chain 10

AURKAIP1/COX24 domain-containing protein

Chain e

Small ribosomal subunit protein uS17

Chain j

Small ribosomal subunit protein uS12