IL_9I5V_113

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUC*GCGA

Length

7 nucleotides

Bulged bases

9I5V|1|a|G|748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_113 not in the Motif Atlas

Geometric match to IL_8CRE_441

Geometric discrepancy: 0.3091

The information below is about IL_8CRE_441

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9I5V|1|a|U|657
9I5V|1|a|U|658
9I5V|1|a|C|659
*
9I5V|1|a|G|746
9I5V|1|a|C|747
9I5V|1|a|G|748
9I5V|1|a|A|749

Current chains

Chain a

16S rRNA

Nearby chains

Chain f

Small ribosomal subunit protein uS15