IL_9I5V_114

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGCG*CAU

Length

7 nucleotides

Bulged bases

9I5V|1|a|C|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_114 not in the Motif Atlas

Geometric match to IL_5T3K_001

Geometric discrepancy: 0.1689

The information below is about IL_5T3K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9I5V|1|a|G|663
9I5V|1|a|G|664
9I5V|1|a|C|665
9I5V|1|a|G|666
*
9I5V|1|a|C|740
9I5V|1|a|A|741
9I5V|1|a|U|742

Current chains

Chain a

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein bS18

Chain b

Small ribosomal subunit protein bS6

Chain f

Small ribosomal subunit protein uS15