IL_9I5V_118
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_118 not in the Motif Atlas
- Geometric match to IL_8B0X_036
- Geometric discrepancy: 0.0712
- The information below is about IL_8B0X_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.3
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9I5V|1|a|C|779
9I5V|1|a|A|780
9I5V|1|a|A|781
9I5V|1|a|A|782
9I5V|1|a|C|783
*
9I5V|1|a|G|799
9I5V|1|a|G|800
9I5V|1|a|U|801
9I5V|1|a|A|802
9I5V|1|a|G|803
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain 9
- Small ribosomal subunit protein bS21
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- Small ribosomal subunit protein uS11
Coloring options: