IL_9I5V_124

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAU*ACG

Length

8 nucleotides

Bulged bases

9I5V|1|a|C|1051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_124 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.0834

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9I5V|1|a|U|1049
9I5V|1|a|G|1050
9I5V|1|a|C|1051
9I5V|1|a|A|1052
9I5V|1|a|U|1053
*
9I5V|1|a|A|1202
9I5V|1|a|C|1203
9I5V|1|a|G|1204

Current chains

Chain a

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein uS14

Chain k

Small ribosomal subunit protein uS3