IL_9I5V_129

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAG*CGAAUC

Length

10 nucleotides

Bulged bases

9I5V|1|a|A|1255, 9I5V|1|a|A|1278, 9I5V|1|a|U|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_129 not in the Motif Atlas

Geometric match to IL_8B0X_054

Geometric discrepancy: 0.2223

The information below is about IL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9I5V|1|a|G|1253
9I5V|1|a|C|1254
9I5V|1|a|A|1255
9I5V|1|a|G|1256
*
9I5V|1|a|C|1275
9I5V|1|a|G|1276
9I5V|1|a|A|1277
9I5V|1|a|A|1278
9I5V|1|a|U|1279
9I5V|1|a|C|1280

Current chains

Chain a

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein uS14

Chain k

Small ribosomal subunit protein uS3