IL_9I78_016
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAC*GGGUUAAAUAGCAC
- Length
- 18 nucleotides
- Bulged bases
- 9I78|1|L1|U|391, 9I78|1|L1|A|395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|G|369
9I78|1|L1|C|370
9I78|1|L1|A|371
9I78|1|L1|C|372
*
9I78|1|L1|G|383
9I78|1|L1|G|384
9I78|1|L1|G|385
9I78|1|L1|U|386
9I78|1|L1|U|387
9I78|1|L1|A|388
9I78|1|L1|A|389
9I78|1|L1|A|390
9I78|1|L1|U|391
9I78|1|L1|A|392
9I78|1|L1|G|393
9I78|1|L1|C|394
9I78|1|L1|A|395
9I78|1|L1|C|396
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain 1
- Translocon Sec61/SecY plug domain-containing protein
- Chain 4
- CCDC47
- Chain 6
- Putative inorganic phosphate transporter protein
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Ll
- Ribosomal protein eL39
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