IL_9I78_022

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAUGUGG*UGUUAUAGC

Length

17 nucleotides

Bulged bases

9I78|1|L1|U|526, 9I78|1|L1|U|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|523
9I78|1|L1|A|524
9I78|1|L1|A|525
9I78|1|L1|U|526
9I78|1|L1|G|527
9I78|1|L1|U|528
9I78|1|L1|G|529
9I78|1|L1|G|530
*
9I78|1|L1|U|543
9I78|1|L1|G|544
9I78|1|L1|U|545
9I78|1|L1|U|546
9I78|1|L1|A|547
9I78|1|L1|U|548
9I78|1|L1|A|549
9I78|1|L1|G|550
9I78|1|L1|C|551

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14-like protein

Chain LS

60S ribosomal protein L20