IL_9I78_039

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GACCUUC*GUAUC

Length

12 nucleotides

Bulged bases

9I78|1|L1|A|959, 9I78|1|L1|C|961, 9I78|1|L1|U|962, 9I78|1|L1|A|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|958
9I78|1|L1|A|959
9I78|1|L1|C|960
9I78|1|L1|C|961
9I78|1|L1|U|962
9I78|1|L1|U|963
9I78|1|L1|C|964
*
9I78|1|L1|G|1084
9I78|1|L1|U|1085
9I78|1|L1|A|1086
9I78|1|L1|U|1087
9I78|1|L1|C|1088

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LQ

Ribosomal protein L18-like protein

Chain Lb

60S ribosomal protein L29