IL_9I78_043

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

9I78|1|L1|G|983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|981
9I78|1|L1|C|982
9I78|1|L1|G|983
9I78|1|L1|A|984
9I78|1|L1|A|985
9I78|1|L1|U|986
*
9I78|1|L1|A|1029
9I78|1|L1|A|1030
9I78|1|L1|A|1031
9I78|1|L1|C|1032

Current chains

Chain L1

26S rRNA

Nearby chains

Chain L3

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LI

60S ribosomal protein L10-like protein

Chain LT

60S ribosomal protein l21-like protein