IL_9I78_052

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCCGGAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|1156
9I78|1|L1|G|1157
9I78|1|L1|C|1158
9I78|1|L1|C|1159
9I78|1|L1|G|1160
9I78|1|L1|G|1161
9I78|1|L1|A|1162
9I78|1|L1|G|1163
*
9I78|1|L1|C|1308
9I78|1|L1|A|1309

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LS

60S ribosomal protein L20

Chain Lf

60S ribosomal protein l33-like protein