IL_9I78_055
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9I78|1|L1|C|1179, 9I78|1|L1|A|1285, 9I78|1|L1|U|1288, 9I78|1|L1|G|1289
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I78|1|L1|G|1177
9I78|1|L1|A|1178
9I78|1|L1|C|1179
9I78|1|L1|A|1180
9I78|1|L1|C|1181
9I78|1|L1|C|1182
9I78|1|L1|A|1183
9I78|1|L1|C|1184
9I78|1|L1|A|1185
9I78|1|L1|A|1186
9I78|1|L1|A|1187
9I78|1|L1|A|1188
*
9I78|1|L1|U|1282
9I78|1|L1|G|1283
9I78|1|L1|A|1284
9I78|1|L1|A|1285
9I78|1|L1|A|1286
9I78|1|L1|A|1287
9I78|1|L1|U|1288
9I78|1|L1|G|1289
9I78|1|L1|G|1290
9I78|1|L1|A|1291
9I78|1|L1|U|1292
9I78|1|L1|G|1293
9I78|1|L1|G|1294
9I78|1|L1|C|1295
9I78|1|L1|G|1296
9I78|1|L1|C|1297
Current chains
- Chain L1
- 26S rRNA
Nearby chains
- Chain L3
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
- Chain Lm
- Putative ribosomal protein
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