IL_9I78_057

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAGUACAUCUUGACAG*CCGAAUGUACUA

Length

29 nucleotides

Bulged bases

9I78|1|L1|U|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|1193
9I78|1|L1|U|1194
9I78|1|L1|A|1195
9I78|1|L1|G|1196
9I78|1|L1|U|1197
9I78|1|L1|A|1198
9I78|1|L1|C|1199
9I78|1|L1|A|1200
9I78|1|L1|U|1201
9I78|1|L1|C|1202
9I78|1|L1|U|1203
9I78|1|L1|U|1204
9I78|1|L1|G|1205
9I78|1|L1|A|1206
9I78|1|L1|C|1207
9I78|1|L1|A|1208
9I78|1|L1|G|1209
*
9I78|1|L1|C|1266
9I78|1|L1|C|1267
9I78|1|L1|G|1268
9I78|1|L1|A|1269
9I78|1|L1|A|1270
9I78|1|L1|U|1271
9I78|1|L1|G|1272
9I78|1|L1|U|1273
9I78|1|L1|A|1274
9I78|1|L1|C|1275
9I78|1|L1|U|1276
9I78|1|L1|A|1277

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LI

60S ribosomal protein L10-like protein

Chain LS

60S ribosomal protein L20

Chain Lm

Putative ribosomal protein