IL_9I78_080

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|1878
9I78|1|L1|G|1879
9I78|1|L1|A|1880
9I78|1|L1|A|1881
9I78|1|L1|G|1882
9I78|1|L1|U|1883
9I78|1|L1|C|1884
9I78|1|L1|G|1885
9I78|1|L1|G|1886
*
9I78|1|L1|C|2296
9I78|1|L1|U|2297
9I78|1|L1|G|2298
9I78|1|L1|U|2299
9I78|1|L1|C|2300

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LV

60S ribosomal protein l23-like protein