IL_9I78_082

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUAAC*GGAAAAG

Length

13 nucleotides

Bulged bases

9I78|1|L1|A|1911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|1898
9I78|1|L1|G|1899
9I78|1|L1|U|1900
9I78|1|L1|A|1901
9I78|1|L1|A|1902
9I78|1|L1|C|1903
*
9I78|1|L1|G|1908
9I78|1|L1|G|1909
9I78|1|L1|A|1910
9I78|1|L1|A|1911
9I78|1|L1|A|1912
9I78|1|L1|A|1913
9I78|1|L1|G|1914

Current chains

Chain L1

26S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41-A

Chain Lp

60S ribosomal protein L43-like protein