IL_9I78_092

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9I78|1|L1|A|2244, 9I78|1|L1|C|2250, 9I78|1|L1|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|2240
9I78|1|L1|C|2241
9I78|1|L1|A|2242
9I78|1|L1|A|2243
9I78|1|L1|A|2244
9I78|1|L1|U|2245
9I78|1|L1|G|2246
9I78|1|L1|C|2247
9I78|1|L1|C|2248
9I78|1|L1|U|2249
9I78|1|L1|C|2250
9I78|1|L1|G|2251
*
9I78|1|L1|C|2267
9I78|1|L1|G|2268
9I78|1|L1|C|2269
9I78|1|L1|G|2270

Current chains

Chain L1

26S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41-A