IL_9I78_121

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

9I78|1|L1|U|3014, 9I78|1|L1|U|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|3012
9I78|1|L1|U|3013
9I78|1|L1|U|3014
9I78|1|L1|U|3015
9I78|1|L1|U|3016
9I78|1|L1|G|3017
*
9I78|1|L1|C|3042
9I78|1|L1|G|3043
9I78|1|L1|A|3044
9I78|1|L1|A|3045
9I78|1|L1|G|3046

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain Ld

Putative 60S ribosomal protein