IL_9I88_018

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UUAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_018 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.1905

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9I88|1|A|U|649
9I88|1|A|U|650
9I88|1|A|A|651
9I88|1|A|A|652
9I88|1|A|G|653
*
9I88|1|A|U|663
9I88|1|A|G|664
9I88|1|A|G|665
9I88|1|A|A|666
9I88|1|A|G|667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Large ribosomal subunit protein uL4

Chain O

Large ribosomal subunit protein uL15